DNA Strand

In addition to specialized analysis, software programs including Genomics Workbench (CLC Bio) and Qiagen Ingenuity Pathway Analysis (IPA) are available to clients via licensing.  Staff are available on a recharge basis to assist users with data analysis for sequencing and microarray projects.  Open-source tools are available in the GRT Hub and on the UCI HPC3. Those tools include Seurat, Monocle, DESeq2, limma, Bowtie2, Samtools, IGV etc. Staff have expertise in computational biology and bioinformatics software development in R, Python, Matlab and Perl.