Spatial Transcriptomic Data Analysis and Software Workshop
Tuesday 04/30/2024
9:00 a.m. to 1:00 p.m.
Sprague Hall, Room 105
This workshop will introduce data analysis workflow with both sequencing and imaging based spatial transcriptomics platforms, using 10x Visium and Xenium as examples. The topics will include an overview of data quality control, preprocessing and visualization, cellular segmentation etc. with 10x proprietary software and state of the art open-source software. A guided tour will be provided on how to run the latest visualization and data exploration tools to support spatial transcriptomics via both the command line and the Jupyterhub of HPC3. Attendees are encouraged to bring their own project data for analysis and discussion.
Introduction Spatial Platform Data Analysis Workflow and Analytical Tools, Jenny Wu, PhD
Interactive Computing On The HPC3 for Spatial Omics, Ivan Chang, PhD
Interactive Computing on the HPC3 for Spatial Omics, Ivan Chang, PhD