10x Genomics FLEX Sample Prep Workshop
Join our workshop to explore the Chromium Single Cell Gene Expression Flex, a leading-edge technology offering the most sensitive whole transcriptome analysis with unparalleled flexibility. This assay opens doors to profound cellular insights using advanced chemistry suitable for a variety of tissue types, including fresh, PFA-fixed, and FFPE tissues. Learn how to streamline your experiments…
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Spatial Transcriptomic Data Analysis and Software Workshop
This workshop will introduce data analysis workflow with both sequencing and imaging based spatial transcriptomics platforms, using 10x Visium and Xenium as examples. The topics will include an overview of data quality control, preprocessing and visualization, cellular segmentation etc. with 10x proprietary software and state of the art open-source software. A guided tour will be…
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Introduction to Linux, HPC3 and R
Workshop Agenda Presentations
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Hands-on Workshop for bulk RNA-seq
Workshop Agenda Presentations (PDF)
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Ensembl Browser and REST API Workshops
Sessions presented by Benjamin Moore, PhD, Ensembl Outreach Manager
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Single Cell RNA-seq Data Analysis Workshops
Workshop Agenda Presentations Intro to Single Cell RNA-seq Data Analysis, Jenny Wu, PhD(PDF version)(Video version) Downstream Analysis of Single Cell RNA-seq Data, Jenny Wu, PhD(PDF version)(Video version) Tools on HPC3 and 10X Cloud for scRNA-seq Data Primary Processing, Ivan Chang, PhD(PDF version)(Video version) Part 1(Video version) Part 2
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DNA Methylation Data Analysis Workshop
Workshop Agenda Presentations (PDFs) Presentations (Videos)
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Hands on Data Analysis Workshop
This workshop served as a summary of the techniques taught in the previous four workshops. Attendees brought their own projects/data/issuesInstruction by Jenny Wu, PhD and Ivan Chang, PhD
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Spatial Transcriptomic Data Analysis with an Emphasis on 10x Genomics Visium
Workshop AgendaIntroduction to 10x Visium Spatial Platform Experimental Design and Workflow, Joshua Talboom, PhD♦ Introduction to 10x Visium – Video Version ♦ Introduction to 10x Visium – PDF versionVisium Data Analysis with 10x Proprietary Software and Open-source Software, Jenny Wu, PhD♦ Visium Data Analysis – Video Version ♦ Visium Data Analysis – PDF VersionAccessing Analytical Tools on…
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10x Genomics Spatial Workshop Series – Three Sessions
Because cells reside within microenvironments, their functions are influenced by the network cells surrounding them, sending and receiving messages. Spatially resolved biology, including whole transcriptomic and targeted in situ methods, allows scientists to build a more complete view of cellular function in a morphological context, representing a paradigm shift in the study of biological systems.…
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