Past Workshop

The vast complexities of biology require approaches to build a complete picture, starting from single cells to tissues and beyond. At 10x Genomics, we provide single cell, spatial, and in situ technologies that fuel scientific discoveries and drive exponential progress. Unravel highly complex biological systems, while bringing into focus the details that matter most. Join…

Join our workshop to explore the Chromium Single Cell Gene Expression Flex, a leading-edge technology offering the most sensitive whole transcriptome analysis with unparalleled flexibility. This assay opens doors to profound cellular insights using advanced chemistry suitable for a variety of tissue types, including fresh, PFA-fixed, and FFPE tissues. Learn how to streamline your experiments…

This workshop will introduce data analysis workflow with both sequencing and imaging based spatial transcriptomics platforms, using 10x Visium and Xenium as examples. The topics will include an overview of data quality control, preprocessing and visualization, cellular segmentation etc. with 10x proprietary software and state of the art open-source software. A guided tour will be…

Workshop Agenda Presentations

Workshop Agenda Presentations (PDF)

Sessions presented by Benjamin Moore, PhD,  Ensembl Outreach Manager

Workshop Agenda Presentations Intro to Single Cell RNA-seq Data Analysis, Jenny Wu, PhD(PDF version)(Video version) Downstream Analysis of Single Cell RNA-seq Data, Jenny Wu, PhD(PDF version)(Video version) Tools on HPC3 and 10X Cloud for scRNA-seq Data Primary Processing, Ivan Chang, PhD(PDF version)(Video version) Part 1(Video version) Part 2

Workshop  Agenda Presentations (PDFs) Presentations (Videos)

This workshop served as a summary of the techniques taught in the previous four workshops. Attendees brought their own projects/data/issuesInstruction by Jenny Wu, PhD and Ivan Chang, PhD

Workshop AgendaIntroduction to 10x Visium Spatial Platform Experimental Design and Workflow, Joshua Talboom, PhD♦ Introduction to 10x Visium – Video Version ♦ Introduction to 10x Visium – PDF versionVisium Data Analysis with 10x Proprietary Software and Open-source Software, Jenny Wu, PhD♦ Visium Data Analysis – Video Version ♦ Visium Data Analysis – PDF VersionAccessing Analytical Tools on…