UCI

This workshop will introduce data analysis workflow with both sequencing and imaging based spatial transcriptomics platforms, using 10x Visium HD and Xenium as examples. The topics will include an overview of preprocessing and data visualization with both 10x proprietary software and the state-of-the-art open-source software. New topics will be discussed including analysis, spatial neighborhood analysis…

This workshop will introduce the applications of deep neural networks to genomics including variant calling, motif discovery, analysis of gene expression, single cell and image analysis using deepVariant, deepBind, cellpose, etc. We will introduce basic concepts in ML and discuss common model architectures and training. We will also touch upon foundation models in single cell…

Click HERE for information for UCI attendees on parking and ride shares In these trying times of threatened funding cuts, federal firings and science censorship, there is an argument to be made that scientists need to display some solidarity.   

This workshop will introduce the applications of statistical and data science methods towards genomics including generalized linear models in count data, pathway analysis, and imaging data analysis. We will review basic concepts in statistics and machine learning, supervised and unsupervised modeling, and generative vs. discriminative approaches. A hands-on session is emphasized and will showcase how…